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SRX2195616: Whole genome shotgun sequencing of Escherichia coli by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1M spots, 358.5M bases, 226.2Mb downloads

External Id: EXT00218403
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: State Hygienic Laboratory at the University of Iowa
PRJNA338681 • SRP083072 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.
Sample:
SAMN05829271 • SRS1717549 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: Escherichia coli Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1M spots, 358.5M bases, 226.2Mb
Run# of Spots# of BasesSizePublished
SRR43011211,013,230358.5M226.2Mb2016-09-28

ID:
3190860

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